IL_8UU9_094

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

8UU9|1|A|U|2435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU9_094 not in the Motif Atlas

Homologous match to IL_4WF9_088

Geometric discrepancy: 0.3075

The information below is about IL_4WF9_088

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8UU9|1|A|U|2434
8UU9|1|A|U|2435
8UU9|1|A|C|2436
*
8UU9|1|A|G|2447
8UU9|1|A|G|2448

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL33

Chain N

Large ribosomal subunit protein uL15