IL_8UU9_110

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUAAA*UGAAGC

Length

12 nucleotides

Bulged bases

8UU9|1|A|A|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU9_110 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.085

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8UU9|1|A|G|2770
8UU9|1|A|A|2771
8UU9|1|A|U|2772
8UU9|1|A|A|2773
8UU9|1|A|A|2774
8UU9|1|A|A|2775
*
8UU9|1|A|U|2795
8UU9|1|A|G|2796
8UU9|1|A|A|2797
8UU9|1|A|A|2798
8UU9|1|A|G|2799
8UU9|1|A|C|2800

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL36

Chain G

Large ribosomal subunit protein uL6

Chain L

Large ribosomal subunit protein uL13