IL_8UU9_170

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU9_170 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.2952

The information below is about IL_5J7L_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8UU9|1|a|C|1266
8UU9|1|a|G|1267
8UU9|1|a|A|1268
8UU9|1|a|A|1269
8UU9|1|a|G|1270
*
8UU9|1|a|U|1279
8UU9|1|a|G|1280
8UU9|1|a|G|1281
8UU9|1|a|A|1282
8UU9|1|a|G|1283

Current chains

Chain a

16S Ribosomal RNA

Nearby chains