IL_8UU9_180

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU9_180 not in the Motif Atlas

Homologous match to IL_4LFB_063

Geometric discrepancy: 0.1275

The information below is about IL_4LFB_063

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8UU9|1|a|G|1442
8UU9|1|a|U|1443
8UU9|1|a|C|1444
*
8UU9|1|a|G|1472
8UU9|1|a|C|1473
8UU9|1|a|C|1474

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain R

Large ribosomal subunit protein bL19

Chain t

Small ribosomal subunit protein bS20