IL_8UVR_070

3D structure

PDB id

8UVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

8UVR|1|1A|G|1801, 8UVR|1|1A|G|1816, 8UVR|1|1A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UVR_070 not in the Motif Atlas

Homologous match to IL_8VTW_069

Geometric discrepancy: 0.0295

The information below is about IL_8VTW_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.4

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8UVR|1|1A|U|1798
8UVR|1|1A|G|1799
8UVR|1|1A|C|1800
8UVR|1|1A|G|1801
8UVR|1|1A|A|1802
8UVR|1|1A|A|1803
8UVR|1|1A|C|1804
*
8UVR|1|1A|G|1813
8UVR|1|1A|G|1814
8UVR|1|1A|A|1815
8UVR|1|1A|G|1816
8UVR|1|1A|G|1817
8UVR|1|1A|U|1818
8UVR|1|1A|A|1819
8UVR|1|1A|U|1820
8UVR|1|1A|A|1821

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA