IL_8UVR_093

3D structure

PDB id

8UVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UVR_093 not in the Motif Atlas

Homologous match to IL_8VTW_092

Geometric discrepancy: 0.0501

The information below is about IL_8VTW_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63450.3

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

8UVR|1|1A|C|2456
8UVR|1|1A|U|2457
8UVR|1|1A|G|2458
8UVR|1|1A|A|2459
*
8UVR|1|1A|U|2493
8UVR|1|1A|G|2494
8UVR|1|1A|G|2495

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 1Q

50S ribosomal protein L16

Chain 1w

Transfer RNA; tRNA