IL_8UVR_191

3D structure

PDB id

8UVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

8UVR|1|2A|U|504, 8UVR|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UVR_191 not in the Motif Atlas

Homologous match to IL_8VTW_013

Geometric discrepancy: 0.0437

The information below is about IL_8VTW_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8UVR|1|2A|G|481
8UVR|1|2A|A|482
8UVR|1|2A|A|483
8UVR|1|2A|C|484
*
8UVR|1|2A|G|496
8UVR|1|2A|A|497
8UVR|1|2A|G|498
8UVR|1|2A|U|499
8UVR|1|2A|G|500
8UVR|1|2A|A|501
8UVR|1|2A|A|502
8UVR|1|2A|A|503
8UVR|1|2A|U|504
8UVR|1|2A|A|505
8UVR|1|2A|G|506
8UVR|1|2A|A|507
8UVR|1|2A|G|508
8UVR|1|2A|C|509

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24