IL_8UVR_241

3D structure

PDB id

8UVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8UVR|1|2A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UVR_241 not in the Motif Atlas

Homologous match to IL_8VTW_067

Geometric discrepancy: 0.1314

The information below is about IL_8VTW_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8UVR|1|2A|C|1686
8UVR|1|2A|G|1687
8UVR|1|2A|U|1688
8UVR|1|2A|A|1689
8UVR|1|2A|A|1690
8UVR|1|2A|C|1691
*
8UVR|1|2A|G|1696
8UVR|1|2A|G|1697
8UVR|1|2A|A|1698
8UVR|1|2A|G|1699
8UVR|1|2A|A|1700
8UVR|1|2A|A|1701
8UVR|1|2A|G|1702

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA