IL_8UVR_305

3D structure

PDB id

8UVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

8UVR|1|2a|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UVR_305 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1095

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8UVR|1|2a|G|409
8UVR|1|2a|G|410
8UVR|1|2a|A|411
8UVR|1|2a|A|412
8UVR|1|2a|G|413
8UVR|1|2a|A|414
8UVR|1|2a|A|415
8UVR|1|2a|G|416
*
8UVR|1|2a|U|427
8UVR|1|2a|G|428
8UVR|1|2a|U|429
8UVR|1|2a|A|430
8UVR|1|2a|A|431
8UVR|1|2a|A|432
8UVR|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4