IL_8UVS_070

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

8UVS|1|1A|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UVS_070 not in the Motif Atlas

Homologous match to IL_8VTW_071

Geometric discrepancy: 0.0636

The information below is about IL_8VTW_071

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_66635.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

23

Unit IDs

8UVS|1|1A|U|1841
8UVS|1|1A|G|1842
*
8UVS|1|1A|U|1898
8UVS|1|1A|G|1899
8UVS|1|1A|A|1900
8UVS|1|1A|A|1901

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA