IL_8UVS_265

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

8UVS|1|2A|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UVS_265 not in the Motif Atlas

Homologous match to IL_8VTW_093

Geometric discrepancy: 0.0723

The information below is about IL_8VTW_093

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8UVS|1|2A|A|2459
8UVS|1|2A|U|2460
8UVS|1|2A|C|2461
*
8UVS|1|2A|G|2489
8UVS|1|2A|G|2490
8UVS|1|2A|U|2491
8UVS|1|2A|U|2492
8UVS|1|2A|U|2493

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16

Chain 2w

Transfer RNA; tRNA