IL_8UVS_326

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

8UVS|1|2a|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UVS_326 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.0822

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8UVS|1|2a|G|925
8UVS|1|2a|G|926
8UVS|1|2a|G|927
*
8UVS|1|2a|U|1390
8UVS|1|2a|U|1391

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2v

MF-mRNA