IL_8UX8_009

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UX8_009 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.3371

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8UX8|1|1|C|274
8UX8|1|1|C|275
8UX8|1|1|U|276
8UX8|1|1|G|277
8UX8|1|1|A|278
8UX8|1|1|A|279
8UX8|1|1|U|280
8UX8|1|1|C|281
*
8UX8|1|1|G|359
8UX8|1|1|U|360
8UX8|1|1|G|361
8UX8|1|1|A|362
8UX8|1|1|G|363

Current chains

Chain 1

23S rRNA

Nearby chains