IL_8UX8_019

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UX8_019 not in the Motif Atlas

Geometric match to IL_9DFE_019

Geometric discrepancy: 0.2109

The information below is about IL_9DFE_019

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8UX8|1|1|U|703
8UX8|1|1|G|704
8UX8|1|1|A|705
8UX8|1|1|A|706
8UX8|1|1|G|707
*
8UX8|1|1|U|724
8UX8|1|1|G|725
8UX8|1|1|G|726
8UX8|1|1|A|727
8UX8|1|1|G|728

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2