IL_8UX8_030
3D structure
- PDB id
- 8UX8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCAAG*CAACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UX8_030 not in the Motif Atlas
- Geometric match to IL_4V9F_085
- Geometric discrepancy: 0.2455
- The information below is about IL_4V9F_085
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8UX8|1|1|G|875
8UX8|1|1|C|876
8UX8|1|1|A|877
8UX8|1|1|A|878
8UX8|1|1|G|879
*
8UX8|1|1|C|898
8UX8|1|1|A|899
8UX8|1|1|A|900
8UX8|1|1|C|901
8UX8|1|1|C|902
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain M
- 50S ribosomal protein L16
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