IL_8UX8_052

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

8UX8|1|1|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UX8_052 not in the Motif Atlas

Geometric match to IL_5J7L_295

Geometric discrepancy: 0.2092

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8UX8|1|1|C|1417
8UX8|1|1|G|1418
8UX8|1|1|A|1419
8UX8|1|1|A|1420
8UX8|1|1|G|1421
*
8UX8|1|1|C|1577
8UX8|1|1|U|1578
8UX8|1|1|A|1579
8UX8|1|1|A|1580
8UX8|1|1|G|1581

Current chains

Chain 1

23S rRNA

Nearby chains