IL_8UX8_072

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8UX8|1|1|A|1899, 8UX8|1|1|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UX8_072 not in the Motif Atlas

Geometric match to IL_4V9F_067

Geometric discrepancy: 0.1335

The information below is about IL_4V9F_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

8UX8|1|1|U|1841
8UX8|1|1|G|1842
*
8UX8|1|1|U|1898
8UX8|1|1|A|1899
8UX8|1|1|A|1900
8UX8|1|1|A|1901

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2