IL_8UX8_129

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UX8_129 not in the Motif Atlas

Geometric match to IL_5J7L_020

Geometric discrepancy: 0.1044

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8UX8|1|2|U|409
8UX8|1|2|G|410
8UX8|1|2|A|411
8UX8|1|2|A|412
8UX8|1|2|G|413
8UX8|1|2|A|414
8UX8|1|2|A|415
8UX8|1|2|G|416
*
8UX8|1|2|U|427
8UX8|1|2|G|428
8UX8|1|2|U|429
8UX8|1|2|A|430
8UX8|1|2|A|431
8UX8|1|2|A|432
8UX8|1|2|G|433

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4