IL_8UX8_138

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UX8_138 not in the Motif Atlas

Geometric match to IL_4LFB_025

Geometric discrepancy: 0.1958

The information below is about IL_4LFB_025

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

29

Unit IDs

8UX8|1|2|G|597
8UX8|1|2|U|598
*
8UX8|1|2|A|640
8UX8|1|2|U|641
8UX8|1|2|A|642
8UX8|1|2|C|643

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain m

Small ribosomal subunit protein uS8

Chain v

Small ribosomal subunit protein uS17