IL_8UX8_156

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

8UX8|1|2|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UX8_156 not in the Motif Atlas

Geometric match to IL_4LFB_044

Geometric discrepancy: 0.1575

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8UX8|1|2|U|1052
8UX8|1|2|G|1053
8UX8|1|2|C|1054
8UX8|1|2|A|1055
8UX8|1|2|U|1056
*
8UX8|1|2|A|1204
8UX8|1|2|U|1205
8UX8|1|2|G|1206

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

mRNA

Chain h

30S ribosomal protein S3

Chain o

Small ribosomal subunit protein uS10

Chain s

Small ribosomal subunit protein uS14