IL_8UXA_002

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAA*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_002 not in the Motif Atlas

Geometric match to IL_1Z7F_005

Geometric discrepancy: 0.1687

The information below is about IL_1Z7F_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8UXA|1|A|G|11
8UXA|1|A|A|12
8UXA|1|A|A|13
*
8UXA|1|A|U|3286
8UXA|1|A|U|3287
8UXA|1|A|C|3288

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain 5

Large ribosomal subunit protein mL44

Chain 9

Large ribosomal subunit protein mL57

Chain O

Large ribosomal subunit protein uL22m