IL_8UXA_010

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAGUAU*AGAAAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_010 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.1174

The information below is about IL_8B0X_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8UXA|1|A|U|279
8UXA|1|A|G|280
8UXA|1|A|A|281
8UXA|1|A|G|282
8UXA|1|A|U|283
8UXA|1|A|A|284
8UXA|1|A|U|285
*
8UXA|1|A|A|293
8UXA|1|A|G|294
8UXA|1|A|A|295
8UXA|1|A|A|296
8UXA|1|A|A|297
8UXA|1|A|A|298

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL15m