IL_8UXA_034

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAU*AUAG

Length

7 nucleotides

Bulged bases

8UXA|1|A|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_034 not in the Motif Atlas

Geometric match to IL_9DFE_044

Geometric discrepancy: 0.2351

The information below is about IL_9DFE_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8UXA|1|A|C|1230
8UXA|1|A|A|1231
8UXA|1|A|U|1232
*
8UXA|1|A|A|1280
8UXA|1|A|U|1281
8UXA|1|A|A|1282
8UXA|1|A|G|1283

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein mL43

Chain D

Large ribosomal subunit protein uL4m

Chain J

Large ribosomal subunit protein uL15m