IL_8UXA_071

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAAC*GAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_071 not in the Motif Atlas

Geometric match to IL_8CRE_474

Geometric discrepancy: 0.2591

The information below is about IL_8CRE_474

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8UXA|1|A|U|2617
8UXA|1|A|A|2618
8UXA|1|A|A|2619
8UXA|1|A|C|2620
*
8UXA|1|A|G|2631
8UXA|1|A|A|2632
8UXA|1|A|A|2633
8UXA|1|A|A|2634

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein mL38

Chain E

Large ribosomal subunit protein uL5m

Chain R

Large ribosomal subunit protein bL27m