IL_8UXA_072

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_072 not in the Motif Atlas

Geometric match to IL_9DFE_090

Geometric discrepancy: 0.235

The information below is about IL_9DFE_090

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

8UXA|1|A|C|2668
8UXA|1|A|A|2669
8UXA|1|A|C|2670
*
8UXA|1|A|G|2681
8UXA|1|A|G|2682

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL15m

Chain X

Large ribosomal subunit protein bL33m

Chain b

Large ribosomal subunit protein mL59