IL_8UXA_092

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAA*UA

Length

5 nucleotides

Bulged bases

8UXA|1|AL|A|38

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_092 not in the Motif Atlas

Homologous match to IL_6CZR_113

Geometric discrepancy: 0.29

The information below is about IL_6CZR_113

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

52

Unit IDs

8UXA|1|AL|U|37
8UXA|1|AL|A|38
8UXA|1|AL|A|39
*
8UXA|1|AL|U|666
8UXA|1|AL|A|667

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain AF

Small ribosomal subunit protein mS45

Chain j

37S ribosomal protein NAM9, mitochondrial

Chain r

Small ribosomal subunit protein uS12m