IL_8UXA_109

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACAAU*AU

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_109 not in the Motif Atlas

Homologous match to IL_6CZR_127

Geometric discrepancy: 0.1667

The information below is about IL_6CZR_127

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.2

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

8UXA|1|AL|A|375
8UXA|1|AL|C|376
8UXA|1|AL|A|377
8UXA|1|AL|A|378
8UXA|1|AL|U|379
*
8UXA|1|AL|A|393
8UXA|1|AL|U|394

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain AB

Small ribosomal subunit protein mS41

Chain v

Small ribosomal subunit protein bS16m