IL_8UXA_117

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAA*UU

Length

5 nucleotides

Bulged bases

8UXA|1|AL|A|694

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_117 not in the Motif Atlas

Geometric match to IL_3CGR_002

Geometric discrepancy: 0.3382

The information below is about IL_3CGR_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8UXA|1|AL|G|693
8UXA|1|AL|A|694
8UXA|1|AL|A|695
*
8UXA|1|AL|U|821
8UXA|1|AL|U|822

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain n

37S ribosomal protein S8, mitochondrial

Chain r

Small ribosomal subunit protein uS12m

Chain u

Small ribosomal subunit protein uS15m

Chain w

37S ribosomal protein S17, mitochondrial