IL_8UXA_124

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAC*GCAC

Length

7 nucleotides

Bulged bases

8UXA|1|AL|A|1462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_124 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2166

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

8UXA|1|AL|G|987
8UXA|1|AL|A|988
8UXA|1|AL|C|989
*
8UXA|1|AL|G|1460
8UXA|1|AL|C|1461
8UXA|1|AL|A|1462
8UXA|1|AL|C|1463

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain AA

Small ribosomal subunit protein mS38

Chain k

Small ribosomal subunit protein uS5m