IL_8UXA_135
3D structure
- PDB id
- 8UXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAAAA*UUUAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UXA_135 not in the Motif Atlas
- Geometric match to IL_4V9F_085
- Geometric discrepancy: 0.2981
- The information below is about IL_4V9F_085
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8UXA|1|AL|U|1293
8UXA|1|AL|A|1294
8UXA|1|AL|A|1295
8UXA|1|AL|A|1296
8UXA|1|AL|A|1297
*
8UXA|1|AL|U|1312
8UXA|1|AL|U|1313
8UXA|1|AL|U|1314
8UXA|1|AL|A|1315
8UXA|1|AL|A|1316
Current chains
- Chain AL
- Small ribosomal subunit rRNA
Nearby chains
- Chain AI
- Small ribosomal subunit protein mS29
- Chain AJ
- Small ribosomal subunit protein mS33
- Chain AK
- Small ribosomal subunit protein mS35
- Chain t
- 37S ribosomal protein MRP2, mitochondrial
- Chain y
- Small ribosomal subunit protein uS19m
Coloring options: