IL_8UXA_138

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAC*GG

Length

5 nucleotides

Bulged bases

8UXA|1|AL|A|1420

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_138 not in the Motif Atlas

Geometric match to IL_1NBS_005

Geometric discrepancy: 0.2468

The information below is about IL_1NBS_005

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8UXA|1|AL|U|1419
8UXA|1|AL|A|1420
8UXA|1|AL|C|1421
*
8UXA|1|AL|G|1439
8UXA|1|AL|G|1440

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain m

Small ribosomal subunit protein uS7m

Chain o

Small ribosomal subunit protein uS9m

Chain p

Small ribosomal subunit protein uS10m