IL_8UXA_139

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCA*UACA

Length

7 nucleotides

Bulged bases

8UXA|1|AL|C|1468, 8UXA|1|AL|C|1595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_139 not in the Motif Atlas

Homologous match to IL_6CZR_165

Geometric discrepancy: 0.2355

The information below is about IL_6CZR_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8UXA|1|AL|U|1467
8UXA|1|AL|C|1468
8UXA|1|AL|A|1469
*
8UXA|1|AL|U|1593
8UXA|1|AL|A|1594
8UXA|1|AL|C|1595
8UXA|1|AL|A|1596

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain AA

Small ribosomal subunit protein mS38

Chain AM

Transfer RNA; tRNA

Chain AN

mRNA