IL_8UXA_141

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_141 not in the Motif Atlas

Geometric match to IL_4LFB_069

Geometric discrepancy: 0.1302

The information below is about IL_4LFB_069

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8UXA|1|AL|A|1473
8UXA|1|AL|U|1474
8UXA|1|AL|C|1475
*
8UXA|1|AL|G|1586
8UXA|1|AL|U|1587
8UXA|1|AL|U|1588

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain AA

Small ribosomal subunit protein mS38

Chain AN

mRNA