IL_8UXB_084

3D structure

PDB id

8UXB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUU*AAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXB_084 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.3498

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8UXB|1|1|C|2103
8UXB|1|1|C|2104
8UXB|1|1|U|2105
8UXB|1|1|U|2106
*
8UXB|1|1|A|2183
8UXB|1|1|A|2184
8UXB|1|1|U|2185
8UXB|1|1|G|2186

Current chains

Chain 1

23S ribosomal RNA

Nearby chains