IL_8UXB_132

3D structure

PDB id

8UXB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

8UXB|1|2|G|413

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXB_132 not in the Motif Atlas

Geometric match to IL_5J7L_020

Geometric discrepancy: 0.209

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8UXB|1|2|U|409
8UXB|1|2|G|410
8UXB|1|2|A|411
8UXB|1|2|A|412
8UXB|1|2|G|413
8UXB|1|2|A|414
8UXB|1|2|A|415
8UXB|1|2|G|416
*
8UXB|1|2|U|427
8UXB|1|2|G|428
8UXB|1|2|U|429
8UXB|1|2|A|430
8UXB|1|2|A|431
8UXB|1|2|A|432
8UXB|1|2|G|433

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4