IL_8UZG_068

3D structure

PDB id

8UZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8UZG|1|1|A|1801, 8UZG|1|1|C|1816, 8UZG|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UZG_068 not in the Motif Atlas

Geometric match to IL_4WF9_069

Geometric discrepancy: 0.1601

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8UZG|1|1|U|1798
8UZG|1|1|G|1799
8UZG|1|1|C|1800
8UZG|1|1|A|1801
8UZG|1|1|A|1802
8UZG|1|1|A|1803
8UZG|1|1|C|1804
*
8UZG|1|1|G|1813
8UZG|1|1|G|1814
8UZG|1|1|A|1815
8UZG|1|1|C|1816
8UZG|1|1|G|1817
8UZG|1|1|U|1818
8UZG|1|1|A|1819
8UZG|1|1|U|1820
8UZG|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2