IL_8V03_018

3D structure

PDB id

8V03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUGAAG*UGGAGGA

Length

13 nucleotides

Bulged bases

8V03|1|1|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V03_018 not in the Motif Atlas

Geometric match to IL_8CRE_465

Geometric discrepancy: 0.2213

The information below is about IL_8CRE_465

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8V03|1|1|U|702
8V03|1|1|U|703
8V03|1|1|G|704
8V03|1|1|A|705
8V03|1|1|A|706
8V03|1|1|G|707
*
8V03|1|1|U|724
8V03|1|1|G|725
8V03|1|1|G|726
8V03|1|1|A|727
8V03|1|1|G|728
8V03|1|1|G|729
8V03|1|1|A|730

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2