IL_8V03_068

3D structure

PDB id

8V03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

8V03|1|1|A|1981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V03_068 not in the Motif Atlas

Geometric match to IL_5J7L_312

Geometric discrepancy: 0.1263

The information below is about IL_5J7L_312

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8V03|1|1|G|1770
8V03|1|1|C|1771
*
8V03|1|1|G|1980
8V03|1|1|A|1981
8V03|1|1|U|1982

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2