IL_8V84_005
3D structure
- PDB id
- 8V84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AU*AGUUGU
- Length
- 8 nucleotides
- Bulged bases
- 8V84|1|1|U|147
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V84_005 not in the Motif Atlas
- Geometric match to IL_5TBW_007
- Geometric discrepancy: 0.075
- The information below is about IL_5TBW_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_19724.3
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8V84|1|1|A|123
8V84|1|1|U|124
*
8V84|1|1|A|144
8V84|1|1|G|145
8V84|1|1|U|146
8V84|1|1|U|147
8V84|1|1|G|148
8V84|1|1|U|149
Current chains
- Chain 1
- Saccharomyces cerevisiae 25S ribosomal RNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- Large ribosomal subunit protein eL8A
- Chain N
- Large ribosomal subunit protein eL15A
- Chain m
- Ribosome biogenesis protein ERB1
- Chain n
- Pescadillo homolog
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