IL_8V84_026

3D structure

PDB id

8V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAAG*CUAGUAGC

Length

13 nucleotides

Bulged bases

8V84|1|1|A|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8V84|1|1|G|805
8V84|1|1|A|806
8V84|1|1|A|807
8V84|1|1|A|808
8V84|1|1|G|809
*
8V84|1|1|C|931
8V84|1|1|U|932
8V84|1|1|A|933
8V84|1|1|G|934
8V84|1|1|U|935
8V84|1|1|A|936
8V84|1|1|G|937
8V84|1|1|C|938

Current chains

Chain 1

Saccharomyces cerevisiae 25S ribosomal RNA

Nearby chains

Chain 8

Ribosomal RNA-processing protein 14

Chain C

60S ribosomal protein L4-A

Chain j

60S ribosomal protein L37-A