IL_8V84_044
3D structure
- PDB id
- 8V84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 8V84|1|1|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V84_044 not in the Motif Atlas
- Geometric match to IL_5TBW_059
- Geometric discrepancy: 0.0769
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
8V84|1|1|U|1388
8V84|1|1|G|1389
8V84|1|1|A|1390
8V84|1|1|C|1391
8V84|1|1|G|1392
8V84|1|1|A|1393
8V84|1|1|A|1394
8V84|1|1|G|1395
*
8V84|1|1|U|1415
8V84|1|1|C|1416
8V84|1|1|G|1417
8V84|1|1|A|1418
8V84|1|1|A|1419
Current chains
- Chain 1
- Saccharomyces cerevisiae 25S ribosomal RNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4-A
- Chain R
- Protein MAK16
- Chain Y
- 60S ribosomal protein L26-A
- Chain e
- 60S ribosomal protein L32
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