IL_8V84_056

3D structure

PDB id

8V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAGUUU*AGGUGGG

Length

13 nucleotides

Bulged bases

8V84|1|1|G|2606

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8V84|1|1|U|2423
8V84|1|1|A|2424
8V84|1|1|G|2425
8V84|1|1|U|2426
8V84|1|1|U|2427
8V84|1|1|U|2428
*
8V84|1|1|A|2601
8V84|1|1|G|2602
8V84|1|1|G|2603
8V84|1|1|U|2604
8V84|1|1|G|2605
8V84|1|1|G|2606
8V84|1|1|G|2607

Current chains

Chain 1

Saccharomyces cerevisiae 25S ribosomal RNA

Nearby chains

Chain l

60S ribosome subunit biogenesis protein NIP7

Chain q

25S rRNA (cytosine(2870)-C(5))-methyltransferase