IL_8V84_059

3D structure

PDB id

8V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V84_059 not in the Motif Atlas

Geometric match to IL_5Z1I_004

Geometric discrepancy: 0.199

The information below is about IL_5Z1I_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

8V84|1|1|A|2441
8V84|1|1|G|2442
8V84|1|1|A|2443
*
8V84|1|1|U|2504
8V84|1|1|U|2505
8V84|1|1|U|2506

Current chains

Chain 1

Saccharomyces cerevisiae 25S ribosomal RNA

Nearby chains

Chain q

25S rRNA (cytosine(2870)-C(5))-methyltransferase