IL_8V84_073

3D structure

PDB id

8V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CU*AUUG

Length

6 nucleotides

Bulged bases

8V84|1|1|U|3078, 8V84|1|1|U|3079

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V84_073 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.2347

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8V84|1|1|C|3063
8V84|1|1|U|3064
*
8V84|1|1|A|3077
8V84|1|1|U|3078
8V84|1|1|U|3079
8V84|1|1|G|3080

Current chains

Chain 1

Saccharomyces cerevisiae 25S ribosomal RNA

Nearby chains

Chain Z

Ribosome biogenesis protein SSF1