IL_8V84_077

3D structure

PDB id

8V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

8V84|1|1|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V84_077 not in the Motif Atlas

Geometric match to IL_5J7L_298

Geometric discrepancy: 0.1773

The information below is about IL_5J7L_298

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8V84|1|1|C|3193
8V84|1|1|C|3194
*
8V84|1|1|G|3197
8V84|1|1|U|3198
8V84|1|1|G|3199

Current chains

Chain 1

Saccharomyces cerevisiae 25S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein uL6A

Chain M

60S ribosomal protein L14-A

Chain O

Large ribosomal subunit protein uL13A