IL_8V84_085
3D structure
- PDB id
- 8V84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGUAAG*CUGAG
- Length
- 11 nucleotides
- Bulged bases
- 8V84|1|1|G|3369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V84_085 not in the Motif Atlas
- Geometric match to IL_4V9F_099
- Geometric discrepancy: 0.1585
- The information below is about IL_4V9F_099
- Detailed Annotation
- tHS double platform
- Broad Annotation
- No text annotation
- Motif group
- IL_70411.2
- Basepair signature
- cWW-tSH-L-tHH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8V84|1|1|U|3332
8V84|1|1|G|3333
8V84|1|1|U|3334
8V84|1|1|A|3335
8V84|1|1|A|3336
8V84|1|1|G|3337
*
8V84|1|1|C|3367
8V84|1|1|U|3368
8V84|1|1|G|3369
8V84|1|1|A|3370
8V84|1|1|G|3371
Current chains
- Chain 1
- Saccharomyces cerevisiae 25S ribosomal RNA
Nearby chains
- Chain B
- Large ribosomal subunit protein uL3
- Chain Z
- Ribosome biogenesis protein SSF1
- Chain u
- Ribosome biogenesis protein RLP24
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