IL_8V84_086

3D structure

PDB id

8V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCA*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCA,UGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V84_086 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.391

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8V84|1|1|G|3337
8V84|1|1|C|3338
8V84|1|1|A|3339
*
8V84|1|1|U|3365
8V84|1|1|G|3366
8V84|1|1|C|3367

Current chains

Chain 1

Saccharomyces cerevisiae 25S ribosomal RNA

Nearby chains

Chain B

Large ribosomal subunit protein uL3

Chain Z

Ribosome biogenesis protein SSF1

Chain u

Ribosome biogenesis protein RLP24