IL_8V84_092

3D structure

PDB id

8V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUU*AGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V84_092 not in the Motif Atlas

Geometric match to IL_5TBW_047

Geometric discrepancy: 0.2262

The information below is about IL_5TBW_047

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8V84|1|2|C|120
8V84|1|2|U|121
8V84|1|2|U|122
*
8V84|1|2|A|131
8V84|1|2|G|132
8V84|1|2|G|133

Current chains

Chain 2

Saccharomyces cerevisiae 5.8S ribosomal RNA

Nearby chains

Chain h

60S ribosomal protein L35-A

Chain n

Pescadillo homolog