IL_8V84_095

3D structure

PDB id

8V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAUA*UUAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8V84|1|6|U|30
8V84|1|6|G|31
8V84|1|6|A|32
8V84|1|6|U|33
8V84|1|6|A|34
*
8V84|1|6|U|45
8V84|1|6|U|46
8V84|1|6|A|47
8V84|1|6|A|48

Current chains

Chain 6

ITS2 RNA

Nearby chains

Chain D

ATP-dependent RNA helicase HAS1

Chain K

Proteasome-interacting protein CIC1

Chain o

Ribosome biogenesis protein 15