IL_8V84_097
3D structure
- PDB id
- 8V84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUCAUCAGACACCACAAAA*UGAAAAUGGAUGGCGCUCAAG
- Length
- 40 nucleotides
- Bulged bases
- 8V84|1|1|U|1191, 8V84|1|1|C|1196, 8V84|1|1|C|1198, 8V84|1|1|A|1302, 8V84|1|1|A|1303, 8V84|1|1|A|1304, 8V84|1|1|G|1307, 8V84|1|1|C|1316
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8V84|1|1|C|1187
8V84|1|1|U|1188
8V84|1|1|C|1189
8V84|1|1|A|1190
8V84|1|1|U|1191
8V84|1|1|C|1192
8V84|1|1|A|1193
8V84|1|1|G|1194
8V84|1|1|A|1195
8V84|1|1|C|1196
8V84|1|1|A|1197
8V84|1|1|C|1198
8V84|1|1|C|1199
8V84|1|1|A|1200
8V84|1|1|C|1201
8V84|1|1|A|1202
8V84|1|1|A|1203
8V84|1|1|A|1204
8V84|1|1|A|1205
*
8V84|1|1|U|1299
8V84|1|1|G|1300
8V84|1|1|A|1301
8V84|1|1|A|1302
8V84|1|1|A|1303
8V84|1|1|A|1304
8V84|1|1|U|1305
8V84|1|1|G|1306
8V84|1|1|G|1307
8V84|1|1|A|1308
8V84|1|1|U|1309
8V84|1|1|G|1310
8V84|1|1|G|1311
8V84|1|1|C|1312
8V84|1|1|G|1313
8V84|1|1|C|1314
8V84|1|1|U|1315
8V84|1|1|C|1316
8V84|1|1|A|1317
8V84|1|1|A|1318
8V84|1|1|G|1319
Current chains
- Chain 1
- Saccharomyces cerevisiae 25S ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L7-A
- Chain H
- Large ribosomal subunit protein uL6A
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- Large ribosomal subunit protein uL13A
- Chain S
- Large ribosomal subunit protein eL20A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain f
- 60S ribosomal protein L33-A
- Chain r
- Ribosome biogenesis protein NSA2
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